Source code for modalysis.server.main

"""FastAPI application entrypoint for modalysis."""

import logging
from contextlib import asynccontextmanager
from typing import AsyncIterator

from fastapi import FastAPI

from modalysis.server.dmr import router as dmr_router
from modalysis.server.gff import router as gff_router
from modalysis.server.pileup import router as pileup_router
from modalysis.server.plot import router as plot_router




@asynccontextmanager
async def lifespan(app: FastAPI) -> AsyncIterator[None]:
    """Configure logging when the FastAPI application starts."""
    logging.basicConfig(
        format="%(asctime)s %(levelname)s %(name)s: %(message)s",
        level=logging.DEBUG,
        force=True,
    )
    yield



app = FastAPI(lifespan=lifespan)

app.include_router(dmr_router)
app.include_router(gff_router)
app.include_router(pileup_router)
app.include_router(plot_router)