API Reference
- Core Modules
normalize_allowed_chromosomes()parse_expression_field()ChromosomeRegionsparse_gff()build_gene_regions()find_genes_at_position()find_genes_overlapping_interval()format()annotate()format()merge()_to_excel_column_name()_excel_inline_string_cell()_excel_number_cell()_write_gene_counts_excel()format()annotate()gene_counts()common_genes()format_modification_label()_find_overlapping_regions()_accumulate_pileup()plot_mean_methylation()_collect_genes_by_combination()_accumulate_pileup_per_gene()plot_gene_heatmap()_build_gene_coordinate_lookup()_collect_dmr_positions()_find_consensus_window()_render_dotplot()plot_dmr_dotplot()_collect_negative_gene_sets()_draw_venn_panel()plot_common_genes_venn()
- Client Modules
- Server Modules
GffFormatRequestGffAnnotateRequestPileupFormatRequestPileupMergeRequestDmrFormatRequestDmrAnnotateRequestDmrGeneCountsRequestDmrCommonGenesRequestPlotMeanMethylationRequestPlotGeneHeatmapRequestPlotDmrDotplotRequestPlotCommonGenesVennRequestlifespan()gff_format()gff_annotate()pileup_format()pileup_merge()dmr_format()dmr_annotate()dmr_gene_counts()dmr_common_genes()plot_mean_methylation()plot_gene_heatmap()plot_dmr_dotplot()plot_common_genes_venn()
- CLI Modules
main()build_parser()register_server_parser()register_gff_parser()register_pileup_parser()register_dmr_parser()register_plot_parser()handle_server()handle_gff_format()handle_gff_annotate()handle_pileup_format()handle_pileup_merge()handle_dmr_format()handle_dmr_annotate()handle_dmr_gene_counts()handle_dmr_common_genes()handle_plot_mean_methylation()handle_plot_gene_heatmap()handle_plot_dmr_dotplot()handle_plot_common_genes_venn()