modalysis Documentation

modalysis is a command-line and HTTP-backed toolkit for methylation and DMR analysis.

Guides

• modalysis
  • Prerequisites
  • Required Input Types
  • Output Types
  • Recommended Pipeline Order
  • Command Reference
  • Troubleshooting
  • Testing
  • Build Docs
• Architecture
  • Design Rules
  • Output Convention
• Command Mapping
  • Server
  • GFF
  • Pileup
  • DMR
  • Plot

API Reference

• API Reference
  • Core Modules
  • Client Modules
  • Server Modules
  • CLI Modules